One Health Enteric sample from Escherichia coli

Identifiers: BioSample: SAMN43565005; Sample name: E-MBS7117A; SRA: SRS23016438

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Package: One Health Enteric; version 1.0

Attributes

isolate name alias	EC2014AMR7040; 13-074859-0002
strain	E-MBS7117A
culture collection	NA
reference material	NA
collected by	Canadian Food Inspection Agency (CFIA) [GENEPIO:0100552]
collection date	2013-09-19
culture isolation date	2013-09-28
geographic location	Canada
isolation source	Abattoir [ENVO:01000925]; Food (raw) [FOODON:03311126]; Meat (with bone) [FOODON:02010116]; Meat (with skin) [FOODON:02010111]; Gallus gallus [NCBITaxon:9031]; Meat (whole or parts) [FOODON:03317170]; Carcass [UBERON:0008979]
source type	food
sample collection device or method	NA
purpose of sampling	Surveillance [GENEPIO:0100004]
project name	National Microbiological Baseline Study in Broiler Chicken December 2012 – December 2013
Interagency Food Safety Analytics Collaboration (IFSAC) category	NA
serotype	NA
serovar	NA
sequenced by	Health Canada (HC) [GENEPIO:0100554]
host	Chicken [NCBITaxon:9031]
host sex	NA
host age	NA
host disease	NA
host subject id	NA
animal environment	Abattoir [ENVO:01000925]
host tissue sampled	NA
host body product	NA
host variety or cultivar	NA
host animal breed	NA
upstream intervention	NA
antimicrobial name	NA
food animal group size	NA
animal housing system	NA
food product origin geographic location	Canada
intended consumer	NA
specific intended consumer	NA
collection site geographic feature	NA
food production system	Broiler chicken production stream [FOODON:03000455]
labeling claims	NA
food product type	Meat (whole or parts) [FOODON:03317170]
FDA food industry code name	NA
FDA food industry class name	NA
food source	Chicken [NCBITaxon:9031]
food processing method	Food (raw) [FOODON:03311126]; Meat (with bone) [FOODON:02010116]; Meat (with skin) [FOODON:02010111]
food preservation process	NA
food additive	NA
food contact surface	NA
food container or wrapping	Bag, sack or pouch [FOODON:03490197]
food packing medium	NA
food packing integrity	NA
food quality date	NA
food product synonym	NA
facility type	Abattoir [ENVO:01000925]
building setting	NA
food type processed in facility	NA
location or room in facility	NA
food production environmental monitoring zone	NA
indoor surface	NA
indoor sampling surface or structure subpart	NA
surface material	NA
material condition	NA
surface orientation	NA
surface temperature	NA
biocide used	NA
animal intrusion near sample source	NA
broad-scale environmental context	NA
local-scale environmental context	NA
environmental medium	NA
plant growth medium	NA
plant water delivery method	NA
relative location of sample	NA
soil type	NA
farm watering water source	NA
fertilizer administration	NA
food cleaning process	NA
sanitizer used during postharvest cleaning	NA
farm equipment used	NA
extreme weather event	NA
mechanical damage	NA

Description: NA

Submission: Canadian Food Inspection Agency, Emil Jurga; 2024-09-10

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
amoxicillin-clavulanic acid	resistant	>	32/16	mg/L	MIC	Sensititre	NA	Panel: CMV2AGNF	CLSI
ampicillin	resistant	>	32	mg/L	MIC	Sensititre	NA	Panel: CMV2AGNF	CLSI
azithromycin	susceptible	==	4	mg/L	MIC	Sensititre	NA	Panel: CMV2AGNF	missing
cefoxitin	resistant	>	32	mg/L	MIC	Sensititre	NA	Panel: CMV2AGNF	CLSI
ceftiofur	resistant	==	8	mg/L	MIC	Sensititre	NA	Panel: CMV2AGNF	CLSI
ceftriaxone	resistant	==	16	mg/L	MIC	Sensititre	NA	Panel: CMV2AGNF	CLSI
chloramphenicol	resistant	>	32	mg/L	MIC	Sensititre	NA	Panel: CMV2AGNF	CLSI
ciprofloxacin	susceptible	<=	0.015	mg/L	MIC	Sensititre	NA	Panel: CMV2AGNF	CLSI
gentamicin	resistant	==	16	mg/L	MIC	Sensititre	NA	Panel: CMV2AGNF	CLSI
kanamycin	intermediate	==	32	mg/L	MIC	Sensititre	NA	Panel: CMV2AGNF	CLSI
nalidixic acid	susceptible	==	1	mg/L	MIC	Sensititre	NA	Panel: CMV2AGNF	CLSI
streptomycin	resistant	>	64	mg/L	MIC	Sensititre	NA	Panel: CMV2AGNF	missing
sulfisoxazole	resistant	>	256	mg/L	MIC	Sensititre	NA	Panel: CMV2AGNF	CLSI
tetracycline	resistant	>	32	mg/L	MIC	Sensititre	NA	Panel: CMV2AGNF	CLSI
trimethoprim-sulfamethoxazole	susceptible	<=	0.12/2.28	mg/L	MIC	Sensititre	NA	Panel: CMV2AGNF	CLSI

Accession:: SAMN43565005
ID:: 43565005

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One Health Enteric sample from Escherichia coli

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