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Metagenome-assembled genome: public_SRR14722086_metawrap_bin.3

Identifiers
BioSample: SAMEA115955375; SRA: ERS20915164
Organism
uncultured bacterium
cellular organisms; Bacteria; environmental samples
Attributes
broad-scale environmental contextThallus of fungal sp. Tripp_6058_COLO-L-0051364 lichen
collection date2016-10-28
environmental mediumlichen thallus
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcelichen metagenome
project nameGenome sequences from the NSF Dimensions in Biodiversity Grant to study the Lichens of the Southern Appalachians
sample namepublic_SRR14722086_metawrap_bin.3
ENA first public2024-09-19
ENA-CHECKLISTERC000047
INSDC center nameSpribille Lab
INSDC statuspublic
Submitter Idpublic_SRR14722086_metawrap_bin.3
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes_v3.13
binning parametersdefault
binning softwaremetaWRAP_v.1.2
completeness score73.97
completeness softwareCheckM_v1.1.3
contamination score4.07
geographic location (latitude)35.48351100
geographic location (longitude)-83.81475800
local environmental contextlichen thallus
metagenomic sourcelichen metagenome
sample derived fromSAMN19302629
scientific_nameuncultured bacterium
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR14722086 of study SRP322526.

Submission
EBI; 2024-09-20
Accession:
SAMEA115955375
ID:
43838307

BioProject Nucleotide

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