Metagenome-assembled genome: public_SRR14722176_me... - BioSample

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Result Filters

Organism: uncultured bacterium
cellular organisms; Bacteria; environmental samples

Attributes

broad-scale environmental context	Thallus of Xanthocarpia feracissima lichen
collection date	2013-03-18
environmental medium	lichen thallus
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	lichen metagenome
project name	Genome sequences from the NSF Dimensions in Biodiversity Grant to study the Lichens of the Southern Appalachians
sample name	public_SRR14722176_metawrap_bin.1
ENA first public	2024-09-19
ENA-CHECKLIST	ERC000047
INSDC center name	Spribille Lab
INSDC status	public
Submitter Id	public_SRR14722176_metawrap_bin.1
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.13
binning parameters	default
binning software	metaWRAP_v.1.2
completeness score	96.02
completeness software	CheckM_v1.1.3
contamination score	0.72
geographic location (latitude)	35.43720000
geographic location (longitude)	-83.74810000
local environmental context	lichen thallus
metagenomic source	lichen metagenome
sample derived from	SAMN19302549
scientific_name	uncultured bacterium
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR14722176 of study SRP322526.

Metagenome-assembled genome: public_SRR14722176_metawrap_bin.1
Metagenome-assembled genome: public_SRR14722176_metawrap_bin.1

biosample
PREDICTED: Homo sapiens ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 (...
PREDICTED: Homo sapiens ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 (ASAP1), transcript variant X13, mRNA
gi|2462619519|ref|XM_054360528.1|

Nucleotide
Homo sapiens RUN domain containing 3A, mRNA (cDNA clone MGC:1161 IMAGE:2823366),...
Homo sapiens RUN domain containing 3A, mRNA (cDNA clone MGC:1161 IMAGE:2823366), complete cds
gi|33870475|gb|BC006194.2|

Nucleotide

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