Metagenome-assembled genome: public_SRR12240181_me... - BioSample

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Result Filters

Organism: uncultured bacterium
cellular organisms; Bacteria; environmental samples

Attributes

broad-scale environmental context	Thallus of Rinodina lichen
collection date	2017
environmental medium	lichen thallus
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	lichen metagenome
project name	short, metagnomic reads from lichen thalli
sample name	public_SRR12240181_metawrap_bin.1
ENA first public	2024-09-19
ENA-CHECKLIST	ERC000047
INSDC center name	Spribille Lab
INSDC status	public
Submitter Id	public_SRR12240181_metawrap_bin.1
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.13
binning parameters	default
binning software	metaWRAP_v.1.2
completeness score	61.11
completeness software	CheckM_v1.1.3
contamination score	0.54
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	lichen thallus
metagenomic source	lichen metagenome
sample derived from	SAMN15548984
scientific_name	uncultured bacterium
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12240181 of study SRP272267.