Metagenome-assembled genome: public_SRR11456922_me... - BioSample

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Result Filters

Organism: uncultured bacterium
cellular organisms; Bacteria; environmental samples

Attributes

broad-scale environmental context	Thallus of Peltigera hydrothyria lichen
collection date	2016-10-05
environmental medium	lichen thallus
geographic location	Canada
investigation type	metagenome-assembled genome
isolation source	lichen metagenome
project name	Metagenomics of the Peltigera-Nostoc symbiosis
sample name	public_SRR11456922_metawrap_bin.2
ENA first public	2024-09-19
ENA-CHECKLIST	ERC000047
INSDC center name	Spribille Lab
INSDC status	public
Submitter Id	public_SRR11456922_metawrap_bin.2
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.13
binning parameters	default
binning software	metaWRAP_v.1.2
completeness score	94.99
completeness software	CheckM_v1.1.3
contamination score	0.0
geographic location (latitude)	46.00000000
geographic location (longitude)	-63.00000000
local environmental context	lichen thallus
metagenomic source	lichen metagenome
sample derived from	SAMN14483409
scientific_name	uncultured bacterium
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR11456922 of study SRP254726.

Metagenome-assembled genome: public_SRR11456922_metawrap_bin.2
Metagenome-assembled genome: public_SRR11456922_metawrap_bin.2

biosample
Metagenome-assembled genome: private_X16_metawrap_bin.30
Metagenome-assembled genome: private_X16_metawrap_bin.30

biosample
Homo sapiens tripartite motif-containing 17, mRNA (cDNA clone MGC:45102 IMAGE:51...
Homo sapiens tripartite motif-containing 17, mRNA (cDNA clone MGC:45102 IMAGE:5165609), complete cds
gi|21707130|gb|BC033788.1|

Nucleotide
Homo sapiens cDNA FLJ42465 fis, clone BRACE2030096
Homo sapiens cDNA FLJ42465 fis, clone BRACE2030096
gi|34530243|dbj|AK124456.1|

Nucleotide

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