CDC Sars CoV2 Sequencing Baseline Constellation

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Identifiers: BioSample: SAMN44482071; SRA: SRS23037026; CDC-OAMD: SARS-CoV-2/Human/USA/AZ-CDC-LC1124531/2024

Organism: Severe acute respiratory syndrome coronavirus 2
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus; Severe acute respiratory syndrome-related coronavirus

Attributes

isolate	SARS-CoV-2/Human/USA/AZ-CDC-LC1124531/2024
collected by	Laboratory Corporation of America
collection date	2024-10-08
isolation source	Nasal Swabs
geographic location	USA: Arizona
host	Homo sapiens
host disease	COVID-19
host sex	female
host age	77
collection device	Nasal Swabs
collection method	Nasal Swabs
purpose of sequencing	baseline surveillance (random sampling)
host_race	Unknown
diagnostic_gene_name_1	N1 gene
diagnostic_pcr_protocol_1	Labcorp LDT
diagnostic_pcr_Ct_value_1	24.971
diagnostic_gene_name_2	N2 gene
diagnostic_pcr_protocol_2	Labcorp LDT
diagnostic_pcr_Ct_value_2	23.816
diagnostic_gene_name_3	RP gene
diagnostic_pcr_protocol_3	Labcorp LDT
diagnostic_pcr_Ct_value_3	32.758
lineage/clade name	KP.3.1.1

CDC Sars CoV2 Sequencing Baseline Constellation
CDC Sars CoV2 Sequencing Baseline Constellation

biosample
hypothetical protein GUITHDRAFT_103061 [Guillardia theta CCMP2712]
hypothetical protein GUITHDRAFT_103061 [Guillardia theta CCMP2712]
gi|428182279|gb|EKX51140.1||gnl|WGS |GUITHDRAFT_103061

Protein
glyoxylate reductase [Saccharomyces cerevisiae S288C]
glyoxylate reductase [Saccharomyces cerevisiae S288C]
Gene ID:855990

Gene
CQD1 Cqd1p [Saccharomyces cerevisiae S288C]
CQD1 Cqd1p [Saccharomyces cerevisiae S288C]
Gene ID:855995

Gene

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