SARS-CoV-2: wastewater surveillance sample from wa... - BioSample

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Result Filters

Identifiers: BioSample: SAMN44627712; Sample name: 241024-SVWRF3-UT; SRA: SRS23149489

Organism: wastewater metagenome
unclassified entries; unclassified sequences; metagenomes; ecological metagenomes

Attributes

collection date	2024-10-24
geographic location	USA: Utah
isolation source	wastewater
wastewater population	254971
wastewater sample duration	24
wastewater sample matrix	raw wastewater
wastewater sample type	composite
wastewater surveillance target 1	SARS-CoV-2
wastewater surveillance target 1 known present	no
purpose of wastewater sampling	public health surveillance community-level
purpose of wastewater sequencing	characterize diversity of lineages and mutations across entire genome
sequenced by	UPHL
wastewater flow	102206118.06
wastewater population source	https://uofuhealth.utah.edu/huntsman/utah-population-database/
wastewater pre-treatment	no
wastewater processing protocol	Promega wastewater large volume TNA capture kit,Promega automated TNA kit
wastewater sample site	wastewater treatment plant
wastewater surveillance jurisdiction	UT
wastewater surveillance system sample ID	13847
wastewater surveillance target 1 concentration	341718.4367
wastewater surveillance target 1 conc unit	copies/L wastewater
wastewater surveillance target 1 gene	N1 & N2 combined
wastewater surveillance target 1 protocol	IDT Research Use Only Kit (https://www.idtdna.com/pages/landing/coronavirus-research-reagents/cdc-assays)

SARS-CoV-2: wastewater surveillance sample from wastewater metagenome
SARS-CoV-2: wastewater surveillance sample from wastewater metagenome

biosample
PREDICTED: Homo sapiens thyroid hormone receptor associated protein 3 (THRAP3), ...
PREDICTED: Homo sapiens thyroid hormone receptor associated protein 3 (THRAP3), transcript variant X6, mRNA
gi|2217272895|ref|XM_047436227.1|

Nucleotide
Pluvianellus socialis voucher MKP2559 cytochrome oxidase subunit I (COI) gene, c...
Pluvianellus socialis voucher MKP2559 cytochrome oxidase subunit I (COI) gene, complete cds; mitochondrial
gi|88910976|gb|DQ385169.1|

Nucleotide
Pluvianellus socialis voucher MKP2559 cytochrome b (cytb) gene, complete cds; mi...
Pluvianellus socialis voucher MKP2559 cytochrome b (cytb) gene, complete cds; mitochondrial
gi|88911078|gb|DQ385220.1|

Nucleotide
Pluvianellus socialis voucher MKP2559 NADH dehydrogenase subunit 4L (ND4L) gene,...
Pluvianellus socialis voucher MKP2559 NADH dehydrogenase subunit 4L (ND4L) gene, complete cds; mitochondrial
gi|88910874|gb|DQ385118.1|

Nucleotide

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