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SARS-CoV-2: wastewater surveillance

Identifiers
BioSample: SAMN44654061; Sample name: WA1023911; SRA: SRS23166109
Organism
wastewater metagenome
unclassified entries; unclassified sequences; metagenomes; ecological metagenomes
Package
SARS-CoV-2: wastewater surveillance; version 1.0
Attributes
collection date2024-10-24
geographic locationUSA: Washington
isolation sourcewastewater
project nameCDC NWSS
collected byWashington State Department of Health
purpose of wastewater samplingpublic health surveillance community-level
wastewater sample sitewastewater treatment plant
wastewater flow0.924
wastewater population15000
wastewater sample matrixraw wastewater
wastewater sample typecomposite
wastewater sample duration3:30
wastewater temperature15.6
wastewater pHNot Collected
wastewater industrial effluent percent1
wastewater total suspended solidsNot Collected
wastewater surveillance system sample ID240388
wastewater pre-treatmentNo
wastewater surveillance target 1SCBS-CoV-2
wastewater surveillance target 1 known presentyes
wastewater surveillance target 1 protocolMultiplex SARS-Flu-RSV-Mpox dPCR
wastewater surveillance target 1 concentration3742000
wastewater surveillance target 1 conc unitCopies/L
wastewater surveillance target 1 geneN
wastewater surveillance target 2Not applicable
purpose of wastewater sequencingCommunity Surveillance
sequenced byWashington State Department of Health
collection_time07:00:00
collection_site_idWA0051063
instantaneous_flowSee ww_flow
collection_volume50 mL
concentration_methodCeres Nanotrap
extraction_methodMagMAX Viral/Pathogen Nucleic Acid Isolation Kit
extraction_controlOC43 Recovery Control
Submission
WA_GT; 2024-11-08
Accession:
SAMN44654061
ID:
44654061

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