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GM12865 female unaffected International hapmap project - ceph (plate i) utah residents with ancestry from northern and western europe sample

Identifiers
BioSample: SAMN00801862; SRA: SRS003558; Coriell: GM12865; Coriell: NA12865
Organism
Homo sapiens (human)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo
Attributes
cell lineGM12865
sexFemale
cell typeB-Lymphocyte
family id1459
family rolemother
raceCaucasian
karyotype45;X 7 /46;XX 43
ethnicityUTAH/MORMON
DNA-IDNA12865
collectionNIGMS Human Genetic Cell Repository
Tags
Cytochrome p450, subfamily iic, polypeptide 19
Ceph/utah pedigree 1459
Cyp2c19
International hapmap project - ceph utah residents with ancestry from northern and western europe
International hapmap project - ceph (plate i) utah residents with ancestry from northern and western europe
Description

Mother;donor subject has a single bp (G-to-A) transition at nucleotide 681 in exon 5 of the CYP2C19 gene (CYP2C19*2) which creates an aberrant splice site. The change altered the reading frame of the mRNA starting with amino acid 215 and produced a premature stop codon 20 amino acids downstream;resulting in a truncated;nonfunctional protein. Because of the aberrant splice site;a 40-bp deletion occurred at the beginning of exon 5 (from bp 643 to bp 682);resulting in deletion of amino acids 215 to 227. The truncated protein had 234 amino acids and would be catalytically inactive because it lacked the heme-binding region.

Submission
Coriell; 2012-03-05
Accession:
SAMN00801862
ID:
801862

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