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Coriell GM12891

Identifiers
BioSample: SAMN00801912; SRA: SRS000091; Coriell: GM12891; 1000G: NA12891; HapMap: NA12891
Organism
Homo sapiens (human)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo
Attributes
cell lineGM12891
sexmale
cell typeB-Lymphocyte
family id1463
family rolematernal grandfather
raceCaucasian
ethnicityUTAH/MORMON
culture collectionCoriell:GM12891
populationCEU
Population DescriptionUtah Residents (CEPH) with Northern and Western European ancestry
Super Population CodeEUR
Super Population DescriptionEuropean
collectionNIGMS Human Genetic Cell Repository
Coriell plateHAPMAPPT01
DNA-IDNA12891
HapMap sample IDNA12891
Tags
Cytochrome p450, subfamily iic, polypeptide 19
Cyp2c19
International hapmap project - ceph utah residents with ancestry from northern and western europe
International hapmap project - ceph (plate i) utah residents with ancestry from northern and western europe
Ceph/utah pedigree 1463
Description

Maternal Grandfather;donor subject is homozygous for a single bp (G-to-A) transition at nucleotide 681 in exon 5 of the CYP2C19 gene (CYP2C19*2) which creates an aberrant splice site. The change altered the reading frame of the mRNA starting with amino acid 215 and produced a premature stop codon 20 amino acids downstream;resulting in a truncated;nonfunctional protein. Because of the aberrant splice site;a 40-bp deletion occurred at the beginning of exon 5 (from bp 643 to bp 682);resulting in deletion of amino acids 215 to 227. The truncated protein had 234 amino acids and would be catalytically inactive because it lacked the heme-binding region.

BioProjects
PRJNA428496 Homo sapiens
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PRJNA418343 Homo sapiens
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PRJNA376266
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PRJEB14185 Strand-Seq haplotyping
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PRJNA325679
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PRJNA236780 Homo sapiens
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PRJNA219338 Homo sapiens
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PRJNA196624 Homo sapiens
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PRJNA186949 Homo sapiens
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PRJNA162527 Homo sapiens
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PRJNA79851 Homo sapiens
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PRJNA59853 Homo sapiens strain:(CEU) CEPH HapMap population
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PRJNA50323 Homo sapiens strain:N/A
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PRJNA28919 Homo sapiens
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PRJNA28917 Homo sapiens
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Submission
Coriell; 2012-03-05
Accession:
SAMN00801912
ID:
801912

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