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Coriell GM11829

Identifiers
BioSample: SAMN00800831; SRA: SRS000041; Coriell: GM11829; 1000G: NA11829; HapMap: NA11829
Organism
Homo sapiens (human)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo
Attributes
family id1350
raceCaucasian
family rolepaternal grandfather
cell lineGM11829
Population DescriptionUtah Residents (CEPH) with Northern and Western European ancestry
cell typeB-Lymphocyte
Super Population DescriptionEuropean
Super Population CodeEUR
culture collectionCoriell:GM11829
ethnicityUTAH/MORMON
populationCEU
sexmale
Coriell plateHAPMAPPT01
DNA-IDNA11829
collectionNIGMS Human Genetic Cell Repository
HapMap sample IDNA11829
Tags
International hapmap project - ceph (plate i) utah residents with ancestry from northern and western europe
Description

Paternal Grandfather;donor subject is homozygous for a single bp (G-to-A) transition at nucleotide 681 in exon 5 of the CYP2C19 gene (CYP2C19*2) which creates an aberrant splice site. The change altered the reading frame of the mRNA starting with amino acid 215 and produced a premature stop codon 20 amino acids downstream;resulting in a truncated;nonfunctional protein. Because of the aberrant splice site;a 40-bp deletion occurred at the beginning of exon 5 (from bp 643 to bp 682);resulting in deletion of amino acids 215 to 227. The truncated protein had 234 amino acids and would be catalytically inactive because it lacked the heme-binding region.

Links
dbSNP Batch ID 1061891
BioProjects
PRJEB31736 1000 Genomes Project phase 3: 30X coverage whole genome sequencing
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PRJNA325679
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PRJNA271692 Homo sapiens
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PRJNA262923 Homo sapiens
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PRJNA211074 Homo sapiens
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PRJNA177916 Homo sapiens
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PRJNA59853 Homo sapiens strain:(CEU) CEPH HapMap population
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PRJNA50323 Homo sapiens strain:N/A
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PRJNA33831 Homo sapiens strain:(CEU) CEPH HapMap population
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PRJNA28917 Homo sapiens
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PRJNA28911 Homo sapiens
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Submission
Coriell; 2012-03-05
Accession:
SAMN00800831
ID:
800831

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