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RNA-seq of Sonalum pimpinellifolium LA1589 seedlings

Identifiers
BioSample: SAMN03769444; Sample name: Sp_seedling_AS1; SRA: SRS962578
Organism
Solanum pimpinellifolium
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Package
Plant; version 1.0
Attributes
biomaterial providerHan Xiao
geographic locationChina
development stage10-days old Seedling
tissueSeedling
ecotypeLA1589
Description

To investigate AS pattern during early fruit growth, we applied strand-specific RNA-seq to analyze the genome-wide AS events in tomato tissues including seedlings, flowers and early growth fruits and compared the AS patterns in fruits between three characteristic stages of early fruit growth. We were able to detect 59.3% of expressed multi-exon genes underwent AS in at least one of the six tissues with an averaged frequency of 42.5% in each tissue.

BioProjects
PRJNA295119 Solanum
Retrieve all samples from this project

PRJNA286151 Solanum
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Submission
Shanghai Institutes for Biological Sciences, Han Xiao; 2015-06-10
Accession:
SAMN03769444
ID:
3769444

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