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TSWV-first instar larvae (L1s) Biorep 3

Identifiers
BioSample: SAMN20340785; Sample name: V 3-L1 Rep3; SRA: SRS9552118
Organism
Frankliniella occidentalis (western flower thrips)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Hexapoda; Insecta; Dicondylia; Pterygota; Neoptera; Paraneoptera; Thysanoptera; Terebrantia; Thripoidea; Thripidae; Thripinae; Frankliniella
Package
Invertebrate; version 1.0
Attributes
isolateNorth Carolina State University, Lab Colony, Isolate from Ohau, Hawaii
hostnot applicable
isolation sourcenot applicable
collection datenot applicable
geographic locationUSA: Hawaii
tissueGut
development stageFirst instar larva (L1)
host tissue sampledGut
replicationBiorep 3
sample_no7
SequencingRNA-Seq
readpaired-end
platformIllumina NextSeq 500
sample_prepTotal RNA extracted from a pool of larval guts using PicoPure RNA Isolation Kit, Library prepared with NEBNext Ultra II Directional RNA Library Prep Kit, plus poly(A) mRNA enrichment and rRNA depletion
file_formatfastq
file name for read 13_V_L1_III_S14_R1_001.fastq.gz
file name for read 23_V_L1_III_S14_R2_001.fastq.gz
Description

pool of gut tissues from L1s, TSWV-infected, 3 hours after 24hr-exposure to TSWV-infected plant tissue

BioProject
PRJNA748697
Retrieve all samples from this project

Submission
NC State University, Dorith Rotenberg; 2021-07-21
Accession:
SAMN20340785
ID:
20340785

BioProject SRA

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