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TSWV-late second instar larvae (L2s) Biorep 4

Identifiers
BioSample: SAMN20340802; Sample name: V 48-L2 Rep4; SRA: SRS9552114
Organism
Frankliniella occidentalis (western flower thrips)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Hexapoda; Insecta; Dicondylia; Pterygota; Neoptera; Paraneoptera; Thysanoptera; Terebrantia; Thripoidea; Thripidae; Thripinae; Frankliniella
Package
Invertebrate; version 1.0
Attributes
isolateNorth Carolina State University, Lab Colony, Isolate from Ohau, Hawaii
hostnot applicable
isolation sourcenot applicable
collection datenot applicable
geographic locationUSA: Hawaii
tissueGut
development stageLate second instar larva (L2)
host tissue sampledGut
replicationBiorep 4
sample_no24
SequencingRNA-Seq
readpaired-end
platformIllumina NextSeq 500
sample_prepTotal RNA extracted from a pool of larval guts using PicoPure RNA Isolation Kit, Library prepared with NEBNext Ultra II Directional RNA Library Prep Kit, plus poly(A) mRNA enrichment and rRNA depletion
file_formatfastq
file name for read 148_V_L2_IV_S24_R1_001.fastq.gz
file name for read 248_V_L2_IV_S24_R2_001.fastq.gz
Description

pool of gut tissues from late L2s, TSWV-infected, 48 hours after 24hr-exposure to TSWV-infected plant tissue

BioProject
PRJNA748697
Retrieve all samples from this project

Submission
NC State University, Dorith Rotenberg; 2021-07-21
Accession:
SAMN20340802
ID:
20340802

BioProject SRA

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