Sample from Bibersteinia trehalosi USDA-ARS-USMARC... - BioSample

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Result Filters

Organism: Bibersteinia trehalosi USDA-ARS-USMARC-190
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Bibersteinia; Bibersteinia trehalosi

Attributes

geographic location	USA: Nebraska
collection date	2010-10-19
strain	USDA-ARS-USMARC-190
broad-scale environmental context	livestock-associated habitat
observed biotic relationship	commensal
environmental package	not collected
local-scale environmental context	livestock-associated habitat
geographic location	USA: Nebraska
health state	Not available
investigation type	bacteria_archaea
isolation and growth condition	Not available
latitude and longitude	Not available
environmental medium	mucus
number of replicons	1
pathogenicity	animal
ploidy	haploid
project name	USMARC Bovine Respiratory Disease Pathogen Sequencing Project
reference for biomaterial	NA
sample collection device or method	swab
host	Bos taurus
annot_source	DIYA
assembly	Celera Assembler v. 7.0 : Consensus accuracy 99.9914% : Quiver v. 1
finishing_strategy	complete : 38 X coverage : error corrected reads >= 6000 bp
seq_meth	PacBio C2 Long Read