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Sample from Mannheimia varigena USDA-ARS-USMARC-1388

Identifiers
BioSample: SAMN03081508; GenBank: gb|CP006953.1
Organism
Mannheimia varigena USDA-ARS-USMARC-1388
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia; Mannheimia varigena
Attributes
geographic locationUSA: Nebraska
collection date2006
strainUSDA-ARS-USMARC-1388
broad-scale environmental contextterrestrial biome
environmental packageNot available
estimated size2500000
local-scale environmental contextlivestock-associated habitat
geographic locationUSA: Nebraska
health statedead
investigation typebacteria_archaea
isolation and growth conditionNot collected
latitude and longitudeNot collected
environmental mediumNot collected
number of replicons1
pathogenicityanimal
ploidyhaploid
project nameUSMARC Bovine Respiratory Disease Pathogen Sequencing Project
reference for biomaterialNot available
hostBos taurus
annot_sourceDIYA
assemblyCelera Assembler v. 7.0 : Consensus accuracy 99.9963% : Quiver version 1
finishing_strategycomplete: 24X coverage: reads >= 8000
seq_methPacBio C2 P4
BioProject
PRJNA230708 Mannheimia varigena USDA-ARS-USMARC-1388
Retrieve all samples from this project

Submission
USDA-ARS-U.S. Meat Animal Research Center, Genetics, Breeding, and Animal Health Research Unit; 2014-09-26
Accession:
SAMN03081508
ID:
3081508

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