U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

1e278958-a431-4333-85d0-ab31df96b810-asg-MAGScoT_cleanbin_000012

Identifiers
BioSample: SAMEA113399558; SRA: ERS15394706
Organism
uncultured Algiphilus sp.
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Nevskiales; Algiphilaceae; Algiphilus; environmental samples
Attributes
broad-scale environmental contextaquatic biome
collected byJOAQUIM GOES
collection date2015-01-13
depth0.0
environmental mediumprotist culture
geographic locationOman
host life stagenot provided
hostNoctiluca scintillans
host taxonomy ID2966 (2966)
identified byJOAQUIM GOES | SENJIE LIN
investigation typemetagenome-assembled genome
isolation sourceProtist: Noctiluca scintillans
tissue**OTHER SOMATIC ANIMAL TISSUE**
project nameASG
family roleEndosymbiont
sample name1e278958-a431-4333-85d0-ab31df96b810
16S recoveredYes
16S recovery softwarePROKKA (version 1.14.5)
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-05-03T10:15:50Z
ENA-LAST-UPDATE2023-11-23T13:17:10Z
External IdSAMEA113399558
GALNova Southeastern University
GAL_sample_idJoeLopez NSU0024101
INSDC center nameTree of Life Programme
INSDC first public2023-05-03T10:15:50Z
INSDC last update2023-11-23T13:17:10Z
INSDC statuspublic
MAG coverage softwareMinimap2 (version 2.24-r1122)
Submitter Id1e278958-a431-4333-85d0-ab31df96b810
assembly qualitySingle contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly softwareHifiasm-Meta (version 0.3-r061); Hifiasm (version 0.13-r308)
barcoding centerNOVA SOUTHEASTERN UNIVERSITY
binning parameterscoverage; graph; hic-mapping
binning softwareMAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
collecting institutionCOLUMBIA UNIVERSITY
completeness score99.18
completeness softwarecheckM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score0.72
geographic location (latitude)23.5256
geographic location (longitude)58.7492
geographic location (region and locality)Bandar Al Khairan
habitatCoastal ocean
identifier_affiliationCOLUMBIA UNIVERSITY | UNIVERSITY OF CONNECTICUT
local environmental contextocean
metagenomic sourceprotist metagenome
number of standard tRNAs extracted48
sample derived fromSAMEA113399541
scientific_nameuncultured Algiphilus sp.
sequencing methodPacbio Sequel II
specimen idNSU0024101
symbiontN
tRNA extraction softwarePROKKA (version 1.14.5)
taxonomic classificationGTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity markertaxonomic classification defined by topology and ANI
tolidpyNocScin1.Algiphilus_sp_1
Submission
EBI; 2023-05-19
Accession:
SAMEA113399558
ID:
35193670

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center