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Lysobacter firmicutimachus (DSMZ PB-6250) de novo Genome Assembly with PacBio CLR

Identifiers
BioSample: SAMN39658517; Sample name: L. firmicutimachus
Organism
Lysobacter firmicutimachus
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter
Package
MIGS: cultured bacteria/archaea, soil; version 6.0
Attributes
strainPB6250
collection date1989
depthnot available
elevationnot available
broad-scale environmental contextterrestrial biome [ENVO:00000446]
local-scale environmental contextsoil environment [ENVO:01001044]
environmental mediumsoil [ENVO:00001998]
geographic locationJapan: Okinawa Prefecture, Okinawa-honto
isolation and growth conditionhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102073
latitude and longitudenot available
number of repliconsnot available
reference for biomaterialhttps://www.jstage.jst.go.jp/article/antibiotics1968/45/6/45_6_817/_pdf/-char/en
isolation sourcesoil
negative control typenot available
positive control typenot available
type-materialtype strain of Lysobacter firmicutimachus
Description

Lysobacter firmicutimachus strain DSM 102073 was purchased from DSMZ (PB-6250) and cultured in liquid broth as specified by the seller. Genomic DNA was isolated, then the PacBio Sequel II platform was used to generate CLR sequences for de novo assembly with Canu, polishing with Flye, and assessment with Inspector.

Keywords: GSC:MIxS;MIGS:6.0

BioProject
PRJNA1070720 Lysobacter yananisis and Lysobacter firmicutimachus
Retrieve all samples from this project

Submission
University of New Mexico, Jeffrey Bierman; 2024-01-29
Accession:
SAMN39658517
ID:
39658517

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