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Uncultivated Methylophaga sp. UBA2012 genome recovered from SRX1044554

Identifiers
BioSample: SAMN06451675; Sample name: Methylophaga sp. UBA2012; SRA: SRS2032034
Organism
Methylophaga sp. UBA2012
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga; unclassified Methylophaga
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationAtlantic Ocean:Mid Cayman Rise
isolateUBA2012
isolation sourceVon Damm hydrothermal vent plume at depth 2041m
metagenome sourcehydrothermal vent metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX1044554 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated98.42%
contamination_estimated1.38%
environmental_sampletrue
genome_coverage65.85
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the hydrothermal vent metagenome reads: SRR2046235.
Description

Uncultivated genome recovered from an assembly of the SRX1044554 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06451675
ID:
6451675

BioProject SRA Nucleotide

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