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Uncultivated Methylophaga sp. UBA678 genome recovered from ERX556016

Identifiers
BioSample: SAMN06455253; Sample name: Methylophaga sp. UBA678; SRA: SRS2031349
Organism
Methylophaga sp. UBA678
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga; unclassified Methylophaga
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationmissing
isolateUBA678
isolation sourcesaline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
metagenome sourcemarine metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in ERX556016 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated83.62%
contamination_estimated0.00%
environmental_sampletrue
genome_coverage30.97
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the marine metagenome reads: ERR599044.
Description

Uncultivated genome recovered from an assembly of the ERX556016 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06455253
ID:
6455253

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