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Uncultivated Xanthomonadaceae bacterium UBA6001 genome recovered from SRX822477

Identifiers
BioSample: SAMN06450860; Sample name: Xanthomonadaceae bacterium UBA6001; SRA: SRS2038939
Organism
Xanthomonadaceae bacterium UBA6001
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; unclassified Xanthomonadaceae
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationUSA:New York City
isolateUBA6001
isolation sourcemetal
metagenome sourceterrestrial metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX822477 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated87.90%
contamination_estimated1.19%
environmental_sampletrue
genome_coverage22.2
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1749094.
Description

Uncultivated genome recovered from an assembly of the SRX822477 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06450860
ID:
6450860

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