Gamma3_OalgB6SA

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Result Filters

Organism: Olavius algarvensis Gamma 3 endosymbiont
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; unclassified Gammaproteobacteria

Attributes

collection date	2014-06-01
broad-scale environmental context	marine benthic biome [ENVO:01000024]
local-scale environmental context	sea grass bed [ENVO:01000059]
environmental medium	shallow marine sediment [ENVO:03000034]
geographic location	Italy
investigation type	bacteria_archaea
isolation source	Olavius algarvensis individual from shallow marine sediments near sea grass bed
project name	Olavius algarvensis symbiont bins
sample name	Gamma3_OalgB6SA
ENA first public	2021-01-30
ENA last update	2020-12-31
ENA-CHECKLIST	ERC000047
External Id	SAMEA7757632
INSDC center alias	MAX-PLANCK INSTITUTE FOR MARINE MICROBIOLOGY, BREMEN
INSDC center name	MAX-PLANCK INSTITUTE FOR MARINE MICROBIOLOGY, BREMEN
INSDC first public	2021-01-30T17:09:11Z
INSDC last update	2020-12-31T09:45:39Z
INSDC status	public
Submitter Id	Gamma3_OalgB6SA
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	megahit;1.0.6
binning parameters	--sensitive -v
binning software	metabat;0.26.3
completeness score	98
completeness software	checkm
contamination score	3
geographic location (latitude)	42.8072
geographic location (longitude)	10.1411
metagenomic source	annelid metagenome
sample derived from	ERS4198359
sequencing method	pyrosequencing
taxonomic identity marker	16S rRNA