Metagenome-assembled genome: SRR5240728_bin.29_met... - BioSample

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Result Filters

Organism: uncultured Bacteroidales bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; environmental samples

Attributes

broad-scale environmental context	Pig digestive system
collection date	2016-08-01
environmental medium	Feces
geographic location	Germany
investigation type	metagenome-assembled genome
isolation source	pig gut metagenome
project name	We studied the intestinal microbiome in feces from sows, five days after farrowing, their piglets during suckling and two weeks after weaning, 5-day old artificially reared and formula-fed siblings, and FP infected with Clostridium difficile.
sample name	SRR5240728_bin.29_metaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-07-14
ENA-LAST-UPDATE	2022-07-14
External Id	SAMEA110360177
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-07-14T16:32:11Z
INSDC last update	2022-07-14T16:32:11Z
INSDC status	public
Submitter Id	SRR5240728_bin.29_metaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	92.75
completeness software	CheckM
contamination score	0.75
geographic location (latitude)	52.45857
geographic location (longitude)	13.288657
local environmental context	Colon
metagenomic source	pig gut metagenome
sample derived from	SAMN06315457
sequencing method	NextSeq 500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5240728 of study SRP099123.