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Metagenome-assembled genome: SRR17382099_bin.22_metaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA110403084; SRA: ERS12501276
Organism
uncultured Prevotella sp.
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples
Attributes
broad-scale environmental contextPig digestive system
collection date2019-05-01
environmental mediumFeces
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcepig gut metagenome
project nameIn the current study, we compared the microbial community, functions and metabolites between healthy weaned piglets (group H, n = 7) and piglets with post-weaning diarrhea (group D, n = 7), in order to find out diarrhea associated microbial markers.
sample nameSRR17382099_bin.22_metaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-22
ENA-LAST-UPDATE2022-07-22
External IdSAMEA110403084
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-07-22T00:26:14Z
INSDC last update2022-07-22T00:26:14Z
INSDC statuspublic
Submitter IdSRR17382099_bin.22_metaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score52.74
completeness softwareCheckM
contamination score1.72
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextIntestine
metagenomic sourcepig gut metagenome
sample derived fromSAMN24505209
sequencing methodIllumina MiSeq
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17382099 of study SRP352908.

BioProject
PRJEB53025
Retrieve all samples from this project

Submission
EBI; 2022-07-23
Accession:
SAMEA110403084
ID:
29918657

BioProject Nucleotide

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