Metagenome-assembled genome: SRR17382100_bin.43_me... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Metagenome-assembled genome: SRR17382100_bin.43_metaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA110403122; SRA: ERS12501314

Organism: uncultured Lachnospiraceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; environmental samples

Attributes

broad-scale environmental context	Pig digestive system
collection date	2019-05-01
environmental medium	Feces
geographic location	China
investigation type	metagenome-assembled genome
isolation source	pig gut metagenome
project name	In the current study, we compared the microbial community, functions and metabolites between healthy weaned piglets (group H, n = 7) and piglets with post-weaning diarrhea (group D, n = 7), in order to find out diarrhea associated microbial markers.
sample name	SRR17382100_bin.43_metaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-07-22
ENA-LAST-UPDATE	2022-07-22
External Id	SAMEA110403122
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-07-22T00:26:16Z
INSDC last update	2022-07-22T00:26:16Z
INSDC status	public
Submitter Id	SRR17382100_bin.43_metaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	95.81
completeness software	CheckM
contamination score	0.48
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	Intestine
metagenomic source	pig gut metagenome
sample derived from	SAMN24505208
sequencing method	Illumina MiSeq
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__;s__
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17382100 of study SRP352908.