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Metagenome-assembled genome: SRR15094062_bin.11_metawrap_v1.3.0_MAG

Identifiers
BioSample: SAMEA110698830; SRA: ERS12796368
Organism
uncultured Candidatus Saccharibacteria bacterium
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Candidatus Saccharibacteria; environmental samples
Attributes
broad-scale environmental contextplant
collection date2020-05-10
environmental mediumrhizosphere
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcerhizosphere metagenome
project nameIn order to obtain the broad-spectrum profile of antibiotic resistance gene in a rhizosphere metagenome, we applied a high-throughput sequencing-based metagenomic approach using the Illumina HiSeq 2000 platform.
sample nameSRR15094062_bin.11_metawrap_v1.3.0_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-08-24
ENA-LAST-UPDATE2022-08-24
External IdSAMEA110698830
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-08-24T12:18:14Z
INSDC last update2022-08-24T12:18:14Z
INSDC statuspublic
Submitter IdSRR15094062_bin.11_metawrap_v1.3.0_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetawrap v1.3.0
broker nameEMG broker account, EMBL-EBI
completeness score59.66
completeness softwareCheckM
contamination score4.02
geographic location (latitude)26.07
geographic location (longitude)119.3
local environmental contexttomato
metagenomic sourcerhizosphere metagenome
sample derived fromSAMN20157758
sequencing methodIllumina HiSeq 2000
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Candidatus Saccharibacteria;c__;o__;f__;g__;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR15094062 of study SRP327770.

BioProject
PRJEB55057
Retrieve all samples from this project

Submission
EBI; 2022-08-25
Accession:
SAMEA110698830
ID:
30495879

BioProject Nucleotide

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