Metagenome-assembled genome: SRR11749291_bin.1_met... - BioSample

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Metagenome-assembled genome: SRR11749291_bin.1_metaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA111491521; SRA: ERS13585532

Organism: Lactobacillus iners
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

Attributes

broad-scale environmental context	Human reproductive system
collection date	2017-01-01
environmental medium	Vagina
geographic location	China
investigation type	metagenome-assembled genome
isolation source	vaginal metagenome
project name	to provide a comprehensive investigation describing the relationship between high-risk HPV16 infection and vaginal microbiome.
sample name	SRR11749291_bin.1_metaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-10-19
ENA-LAST-UPDATE	2022-10-19
External Id	SAMEA111491521
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-10-19T12:28:16Z
INSDC last update	2022-10-19T12:28:16Z
INSDC status	public
Submitter Id	SRR11749291_bin.1_metaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	52.53
completeness software	CheckM
contamination score	0.88
geographic location (latitude)	30.26
geographic location (longitude)	120.32
local environmental context	Vagina
metagenomic source	vaginal metagenome
sample derived from	SAMN14859610
sequencing method	HiSeq X Ten
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus iners
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11749291 of study SRP225101.