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Metagenome-assembled genome: SRR15322610_bin.1_metawrap_v1.3_MAG

Identifiers
BioSample: SAMEA112145400; SRA: ERS14255158
Organism
uncultured Helicobacter sp.
cellular organisms; Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; environmental samples
Attributes
broad-scale environmental contextmouse digestive system
collection date2021-01-20
environmental mediumfeces
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcemouse gut metagenome
project nameFive male C57BM/6 mice were given healthy feeding and alcohol feeding respectively. The healthy feeding mice were the control group, and the alcohol feeding mice were the experimental group. The experimental group mice were given double bottles of alcohol and ultra-pure water, and the alcohol concentration gradient was 9%, 12% and 15%, and the concentration was successively fed from low to high, and each concentration was fed for 7 days.
sample nameSRR15322610_bin.1_metawrap_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-11-18
ENA-LAST-UPDATE2022-11-18
External IdSAMEA112145400
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-11-18T12:20:49Z
INSDC last update2022-11-18T12:20:49Z
INSDC statuspublic
Submitter IdSRR15322610_bin.1_metawrap_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarenot provided
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetawrap v1.3
broker nameEMG broker account, EMBL-EBI
completeness score99.59
completeness softwareCheckM
contamination score0.53
geographic location (latitude)30.4
geographic location (longitude)120.7
local environmental contextdigestive tube
metagenomic sourcemouse gut metagenome
sample derived fromSAMN20499450
sequencing methodIllumina NovaSeq 6000
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Epsilonproteobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR15322610 of study SRP330821.

BioProject
PRJEB57301
Retrieve all samples from this project

Submission
EBI; 2022-11-19
Accession:
SAMEA112145400
ID:
31798820

BioProject Nucleotide

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