Metagenome-assembled genome: SRR18439534_bin.19_me... - BioSample

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Result Filters

Organism: uncultured Lachnospiraceae bacterium
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; environmental samples

Attributes

broad-scale environmental context	mouse digestive system
collection date	2020-11-01
environmental medium	feces
geographic location	China
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	effect of PCB126 exposure on mice gut microbiota
sample name	SRR18439534_bin.19_metawrap_v1.3_MAG
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
Submitter Id	SRR18439534_bin.19_metawrap_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metawrap v1.3
broker name	EBI-EMG
completeness score	93.5
completeness software	CheckM
contamination score	2.01
geographic location (latitude)	39.56
geographic location (longitude)	116.2
local environmental context	digestive tube
metagenomic source	mouse gut metagenome
sample derived from	SAMN26634061
scientific_name	uncultured Lachnospiraceae bacterium
sequencing method	Illumina NovaSeq 6000
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__;s__
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR18439534 of study SRP365352.

Metagenome-assembled genome: SRR18439534_bin.19_metawrap_v1.3_MAG
Metagenome-assembled genome: SRR18439534_bin.19_metawrap_v1.3_MAG

biosample
MAG TPA_asm: uncultured Lachnospiraceae bacterium isolate SRR18439532_bin.10_met...
MAG TPA_asm: uncultured Lachnospiraceae bacterium isolate SRR18439532_bin.10_metawrap_v1.3_MAG, whole genome shotgun sequencing project
gi|2361995236|tpe|CANEEF000000000.1 EF010000000

Nucleotide
MAG TPA_asm: uncultured Clostridium sp. isolate SRR18439538_bin.11_metawrap_v1.3...
MAG TPA_asm: uncultured Clostridium sp. isolate SRR18439538_bin.11_metawrap_v1.3_MAG, whole genome shotgun sequencing project
gi|2361712370|tpe|CANEGO000000000.1 GO010000000

Nucleotide
MAG TPA_asm: uncultured Prevotella sp. isolate SRR18439531_bin.23_metawrap_v1.3_...
MAG TPA_asm: uncultured Prevotella sp. isolate SRR18439531_bin.23_metawrap_v1.3_MAG, whole genome shotgun sequencing project
gi|2361817348|tpe|CANEIV000000000.1 IV010000000

Nucleotide
MAG TPA_asm: uncultured Desulfovibrio sp. isolate SRR18439534_bin.5_metawrap_v1....
MAG TPA_asm: uncultured Desulfovibrio sp. isolate SRR18439534_bin.5_metawrap_v1.3_MAG, whole genome shotgun sequencing project
gi|2361834040|tpe|CANEDF000000000.1 DF010000000

Nucleotide

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