bin.205 MAG

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Result Filters

Organism: Arcobacter lacus
cellular organisms; Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Arcobacteraceae; Arcobacter

Attributes

broad-scale environmental context	ENVO_01000023
collection date	2011-06-05
environmental medium	ENVO_00002006
geographic location	Pacific Ocean
isolation source	North Pacific
project name	GEN_BGC Atlantic-Pacific 2011
sample name	bin.205 MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-03-06
ENA-LAST-UPDATE	2023-03-06
External Id	SAMEA112746654
INSDC center alias	IDAEA-CSIC
INSDC center name	IDAEA-CSIC
INSDC first public	2023-03-06T12:25:11Z
INSDC last update	2023-03-06T12:25:11Z
INSDC status	public
Submitter Id	bin.205 MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT
binning parameters	default
binning software	MetaBAT2
completeness score	80.1
completeness software	CheckM
contamination score	2.64
geographic location (latitude)	8.809
geographic location (longitude)	-93.143
local environmental context	ENVO_01000035
metagenomic source	marine metagenome
sample derived from	ERS14678684,ERS14678685,ERS14678686,ERS14678687,ERS14678688,ERS14678689,ERS14678690,ERS14678691,ERS14678692,ERS14678693,ERS14678694,ERS14678695
scientific_name	Arcobacter lacus
taxonomic identity marker	GTDB-Tk bac120

BioProject: PRJEB60184 Responses to organic pollutants in the tropical Pacific and subtropical Atlantic oceans by pelagic marine bacteria
Retrieve all samples from this project

bin.205 MAG
bin.205 MAG

biosample
MAG: Flavobacterium sp. SCGC AAA160-P02 isolate bin.489 MAG, whole genome shotgu...
MAG: Flavobacterium sp. SCGC AAA160-P02 isolate bin.489 MAG, whole genome shotgun sequencing project
gi|2476707242|emb|CATISV000000000.1 SV010000000

Nucleotide
Mus musculus purinergic receptor P2X, ligand-gated ion channel 4 (P2rx4), transc...
Mus musculus purinergic receptor P2X, ligand-gated ion channel 4 (P2rx4), transcript variant 1, mRNA
gi|894216124|ref|NM_011026.3|

Nucleotide
MAG: Polaribacter sejongensis isolate bin.723 MAG, whole genome shotgun sequenci...
MAG: Polaribacter sejongensis isolate bin.723 MAG, whole genome shotgun sequencing project
gi|2476702465|emb|CATITK000000000.1 TK010000000

Nucleotide
MAG: Halieaceae bacterium isolate bin.470 MAG, whole genome shotgun sequencing p...
MAG: Halieaceae bacterium isolate bin.470 MAG, whole genome shotgun sequencing project
gi|2476312730|emb|CATITT000000000.1 TT010000000

Nucleotide

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