bin.305 MAG

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Result Filters

Organism: SAR116 cluster bacterium
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Alphaproteobacteria incertae sedis; SAR116 cluster; unclassified SAR116 cluster

Attributes

broad-scale environmental context	ENVO_01000023
collection date	2011-06-07
environmental medium	ENVO_00002006
geographic location	Pacific Ocean
isolation source	North Pacific
project name	GEN_BGC Atlantic-Pacific 2011
sample name	bin.305 MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-03-06
ENA-LAST-UPDATE	2023-03-06
External Id	SAMEA112746675
INSDC center alias	IDAEA-CSIC
INSDC center name	IDAEA-CSIC
INSDC first public	2023-03-06T12:25:11Z
INSDC last update	2023-03-06T12:25:11Z
INSDC status	public
Submitter Id	bin.305 MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT
binning parameters	default
binning software	MetaBAT2
completeness score	86.45
completeness software	CheckM
contamination score	4.43
geographic location (latitude)	7.207
geographic location (longitude)	-87.9
local environmental context	ENVO_01000035
metagenomic source	marine metagenome
sample derived from	ERS14678684,ERS14678685,ERS14678686,ERS14678687,ERS14678688,ERS14678689,ERS14678690,ERS14678691,ERS14678692,ERS14678693,ERS14678694,ERS14678695
scientific_name	SAR116 cluster bacterium
taxonomic identity marker	GTDB-Tk bac120

BioProject: PRJEB60184 Responses to organic pollutants in the tropical Pacific and subtropical Atlantic oceans by pelagic marine bacteria
Retrieve all samples from this project

bin.305 MAG
bin.305 MAG

biosample
bin.430 MAG
bin.430 MAG

biosample
MAG: Rhodothermaeota bacterium MED-G12 isolate bin.755 MAG, whole genome shotgun...
MAG: Rhodothermaeota bacterium MED-G12 isolate bin.755 MAG, whole genome shotgun sequencing project
gi|2476101449|emb|CATISK000000000.1 SK010000000

Nucleotide
MAG: Flavobacteriia bacterium isolate bin.86 MAG, whole genome shotgun sequencin...
MAG: Flavobacteriia bacterium isolate bin.86 MAG, whole genome shotgun sequencing project
gi|2476296481|emb|CATILC000000000.1 LC010000000

Nucleotide
MAG: Owenweeksia sp. TMED14 isolate bin.783 MAG, whole genome shotgun sequencing...
MAG: Owenweeksia sp. TMED14 isolate bin.783 MAG, whole genome shotgun sequencing project
gi|2475457998|emb|CATIRS000000000.1 RS010000000

Nucleotide

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