bin.349 MAG

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Result Filters

Organism: Candidatus Nitrosopelagicus brevis
cellular organisms; Archaea; Thermoproteati; Nitrososphaerota; Nitrososphaerota incertae sedis; Candidatus Nitrosopelagicus

Attributes

broad-scale environmental context	ENVO_01000023
collection date	2011-07-10
environmental medium	ENVO_00002006
geographic location	Atlantic Ocean
isolation source	North Atlantic
project name	GEN_BGC Atlantic-Pacific 2011
sample name	bin.349 MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-03-06
ENA-LAST-UPDATE	2023-03-06
External Id	SAMEA112746687
INSDC center alias	IDAEA-CSIC
INSDC center name	IDAEA-CSIC
INSDC first public	2023-03-06T12:25:11Z
INSDC last update	2023-03-06T12:25:11Z
INSDC status	public
Submitter Id	bin.349 MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT
binning parameters	default
binning software	MetaBAT2
completeness score	79.87
completeness software	CheckM
contamination score	4.21
geographic location (latitude)	32.084
geographic location (longitude)	-17.286
local environmental context	ENVO_01000035
metagenomic source	marine metagenome
sample derived from	ERS14678684,ERS14678685,ERS14678686,ERS14678687,ERS14678688,ERS14678689,ERS14678690,ERS14678691,ERS14678692,ERS14678693,ERS14678694,ERS14678695
scientific_name	Candidatus Nitrosopelagicus brevis
taxonomic identity marker	GTDB-Tk ar53

BioProject: PRJEB60184 Responses to organic pollutants in the tropical Pacific and subtropical Atlantic oceans by pelagic marine bacteria
Retrieve all samples from this project

bin.349 MAG
bin.349 MAG

biosample
MAG: Chloroflexota bacterium isolate bin.509 MAG, whole genome shotgun sequencin...
MAG: Chloroflexota bacterium isolate bin.509 MAG, whole genome shotgun sequencing project
gi|2475685373|emb|CATIQW000000000.1 QW010000000

Nucleotide
Mus musculus sphingosine-1-phosphate receptor 2 (S1pr2), mRNA
Mus musculus sphingosine-1-phosphate receptor 2 (S1pr2), mRNA
gi|160333543|ref|NM_010333.4|

Nucleotide
MAG: Candidatus Nitrosopelagicus brevis isolate bin.349 MAG, whole genome shotgu...
MAG: Candidatus Nitrosopelagicus brevis isolate bin.349 MAG, whole genome shotgun sequencing project
gi|2468031901|emb|CATCZV000000000.1 ZV010000000

Nucleotide
MAG: Marine Group II euryarchaeote MED-G33 isolate bin.838 MAG, whole genome sho...
MAG: Marine Group II euryarchaeote MED-G33 isolate bin.838 MAG, whole genome shotgun sequencing project
gi|2475722104|emb|CATISE000000000.1 SE010000000

Nucleotide

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