bin.834 MAG

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Result Filters

Organism: Bacteroidetes bacterium MED-G17
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; unclassified Bacteroidota

Attributes

broad-scale environmental context	ENVO_01000023
collection date	2011-06-05
environmental medium	ENVO_00002006
geographic location	Pacific Ocean
isolation source	North Pacific
project name	GEN_BGC Atlantic-Pacific 2011
sample name	bin.834 MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-03-06
ENA-LAST-UPDATE	2023-03-06
External Id	SAMEA112746769
INSDC center alias	IDAEA-CSIC
INSDC center name	IDAEA-CSIC
INSDC first public	2023-03-06T12:25:11Z
INSDC last update	2023-03-06T12:25:11Z
INSDC status	public
Submitter Id	bin.834 MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT
binning parameters	default
binning software	MetaBAT2
completeness score	91.75
completeness software	CheckM
contamination score	4.95
geographic location (latitude)	8.809
geographic location (longitude)	-93.143
local environmental context	ENVO_01000035
metagenomic source	marine metagenome
sample derived from	ERS14678684,ERS14678685,ERS14678686,ERS14678687,ERS14678688,ERS14678689,ERS14678690,ERS14678691,ERS14678692,ERS14678693,ERS14678694,ERS14678695
scientific_name	Bacteroidetes bacterium MED-G17
taxonomic identity marker	GTDB-Tk bac120

BioProject: PRJEB60184 Responses to organic pollutants in the tropical Pacific and subtropical Atlantic oceans by pelagic marine bacteria
Retrieve all samples from this project

bin.834 MAG
bin.834 MAG

biosample
MAG: Flavobacteriaceae bacterium isolate bin.159 MAG, whole genome shotgun seque...
MAG: Flavobacteriaceae bacterium isolate bin.159 MAG, whole genome shotgun sequencing project
gi|2475430656|emb|CATEMS000000000.1 MS010000000

Nucleotide
Mus musculus solute carrier family 29 (nucleoside transporters), member 3 (Slc29...
Mus musculus solute carrier family 29 (nucleoside transporters), member 3 (Slc29a3), mRNA
gi|110347496|ref|NM_023596.3|

Nucleotide
MAG: Flavobacteriaceae bacterium isolate bin.357 MAG, whole genome shotgun seque...
MAG: Flavobacteriaceae bacterium isolate bin.357 MAG, whole genome shotgun sequencing project
gi|2476301518|emb|CATDQB000000000.1 QB010000000

Nucleotide
general transcription factor IIF subunit 2 isoform X1 [Homo sapiens]
general transcription factor IIF subunit 2 isoform X1 [Homo sapiens]
gi|2462536979|ref|XP_054230456.1|

Protein

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