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Metagenome-Assembled Genome: ERR10960938_bin.2_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114061535; SRA: ERS16045401
Organism
uncultured Lachnospiraceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; environmental samples
Attributes
broad-scale environmental contextHuman digestive system
collection date2018
environmental mediumfaeces
geographic locationKenya
investigation typemetagenome-assembled genome
isolation sourcehuman feces metagenome
project nameShotgun metagenomics from Kenyan infants
sample nameERR10960938_bin.2_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-07-13T16:22:54Z
ENA-LAST-UPDATE2023-07-13T16:22:54Z
External IdSAMEA114061535
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-07-13T16:22:54Z
INSDC last update2023-07-13T16:22:54Z
INSDC statuspublic
Submitter IdERR10960938_bin.2_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score74.0
completeness softwareCheckM
contamination score1.58
geographic location (latitude)-0.023636
geographic location (longitude)37.910405
local environmental contextcolon
metagenomic sourcehuman feces metagenome
sample derived fromSAMEA112710985
scientific_nameuncultured Lachnospiraceae bacterium
sequencing methodIllumina NovaSeq 6000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR10960938 of study ERP137488.

BioProject
PRJEB62839
Retrieve all samples from this project

Submission
EBI; 2023-07-17
Accession:
SAMEA114061535
ID:
36477628

BioProject Nucleotide

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