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Metagenome-Assembled Genome: ERR4918869_bin.26_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114062466; SRA: ERS16046330
Organism
uncultured Clostridium sp.
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; environmental samples
Attributes
broad-scale environmental contextHuman digestive system
collection date2019-01-10
environmental mediumfaeces
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcehuman feces metagenome
project nameMounting evidences have linked microbiome and metabolome to systemic autoimmunity and cardiovascular diseases. A rare overlapped disease, Takayasu arteritis(TA), has limited information. This study aimed to characterize discriminatory gut dysbiosis, host metabolite and lipid profiles, and their crosstalk with disease phenotypes in TA.
sample nameERR4918869_bin.26_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-07-13T16:22:58Z
ENA-LAST-UPDATE2023-07-13T16:22:58Z
External IdSAMEA114062466
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-07-13T16:22:58Z
INSDC last update2023-07-13T16:22:58Z
INSDC statuspublic
Submitter IdERR4918869_bin.26_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score73.33
completeness softwareCheckM
contamination score0.0
geographic location (latitude)39.9
geographic location (longitude)116.3
local environmental contextcolon
metagenomic sourcehuman feces metagenome
sample derived fromSAMEA7689959
scientific_nameuncultured Clostridium sp.
sequencing methodIllumina NovaSeq 6000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4918869 of study ERP125333.

BioProject
PRJEB62692
Retrieve all samples from this project

Submission
EBI; 2023-07-17
Accession:
SAMEA114062466
ID:
36478529

BioProject Nucleotide

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