| broad-scale environmental context | Human digestive system |
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| collection date | 2019-05-10 |
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| environmental medium | faeces |
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| geographic location | China |
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| investigation type | metagenome-assembled genome |
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| isolation source | human feces metagenome |
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| project name | Mounting evidences have linked microbiome and metabolome to systemic autoimmunity and cardiovascular diseases. A rare overlapped disease, Takayasu arteritis(TA), has limited information. This study aimed to characterize discriminatory gut dysbiosis, host metabolite and lipid profiles, and their crosstalk with disease phenotypes in TA. |
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| sample name | ERR4918892_bin.4_MetaWRAP_v1.3_MAG |
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| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2023-07-13T16:22:59Z |
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| ENA-LAST-UPDATE | 2023-07-13T16:22:59Z |
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| External Id | SAMEA114062493 |
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| INSDC center alias | EMG |
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| INSDC center name | EMG |
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| INSDC first public | 2023-07-13T16:22:59Z |
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| INSDC last update | 2023-07-13T16:22:59Z |
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| INSDC status | public |
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| Submitter Id | ERR4918892_bin.4_MetaWRAP_v1.3_MAG |
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| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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| assembly software | metaspades v3.15.3 |
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| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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| binning software | MetaWRAP v1.3 |
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| broker name | EMG broker account, EMBL-EBI |
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| completeness score | 55.55 |
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| completeness software | CheckM |
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| contamination score | 0.11 |
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| geographic location (latitude) | 39.9 |
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| geographic location (longitude) | 116.3 |
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| local environmental context | colon |
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| metagenomic source | human feces metagenome |
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| sample derived from | SAMEA7689982 |
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| scientific_name | Streptococcus parasanguinis |
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| sequencing method | Illumina NovaSeq 6000 |
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| taxonomic classification | The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus parasanguinis |
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| taxonomic identity marker | multi-marker approach |
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