Metagenome-Assembled Genome: ERR4918979_bin.4_Meta... - BioSample

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Result Filters

Metagenome-Assembled Genome: ERR4918979_bin.4_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA114062682; SRA: ERS16046546

Organism: Comamonas kerstersii
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas

Attributes

broad-scale environmental context	Human digestive system
collection date	2019-09-19
environmental medium	faeces
geographic location	China
investigation type	metagenome-assembled genome
isolation source	human feces metagenome
project name	Mounting evidences have linked microbiome and metabolome to systemic autoimmunity and cardiovascular diseases. A rare overlapped disease, Takayasu arteritis(TA), has limited information. This study aimed to characterize discriminatory gut dysbiosis, host metabolite and lipid profiles, and their crosstalk with disease phenotypes in TA.
sample name	ERR4918979_bin.4_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-07-13T16:23:00Z
ENA-LAST-UPDATE	2023-07-13T16:23:00Z
External Id	SAMEA114062682
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2023-07-13T16:23:00Z
INSDC last update	2023-07-13T16:23:00Z
INSDC status	public
Submitter Id	ERR4918979_bin.4_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	97.52
completeness software	CheckM
contamination score	0.67
geographic location (latitude)	37.9
geographic location (longitude)	112.6
local environmental context	colon
metagenomic source	human feces metagenome
sample derived from	SAMEA7690069
scientific_name	Comamonas kerstersii
sequencing method	Illumina NovaSeq 6000
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__Comamonadaceae;g__Comamonas;s__Comamonas kerstersii
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4918979 of study ERP125333.