Metagenome-Assembled Genome: SRR11085303_bin.4_Met... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Metagenome-Assembled Genome: SRR11085303_bin.4_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA114382514; SRA: ERS16371611

Organism: uncultured Lachnoanaerobaculum sp.
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoanaerobaculum; environmental samples

Attributes

broad-scale environmental context	human digestive system
collection date	2012
environmental medium	subgingival plaque
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	oral metagenome
project name	The samples within this Bioproject represents the oral metagenome (whole genome shotgun (WGS) sequencing) collected from the Native American Indian tribes of South Dakota. The samples were collected from the dental plaque of children aged 5-18 years old. The samples are collected from 5 different conditions: healthy, light caries, moderate caries, severe caries, and periodontal caries. The project goal is to identify the species level characterization of the bacterial community present in the oral metagenome.
sample name	SRR11085303_bin.4_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
Submitter Id	SRR11085303_bin.4_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EBI-EMG
completeness score	57.59
completeness software	CheckM
contamination score	0.32
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	oral cavity
metagenomic source	oral metagenome
sample derived from	SAMN13714825
scientific_name	uncultured Lachnoanaerobaculum sp.
sequencing method	Illumina MiSeq
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Lachnoanaerobaculum;s__
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR11085303 of study SRP249393.