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Metagenome-Assembled Genome: SRR11085311_bin.13_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114382559; SRA: ERS16371656
Organism
Selenomonas noxia
cellular organisms; Bacteria; Bacillati; Bacillota; Negativicutes; Selenomonadales; Selenomonadaceae; Selenomonas
Attributes
broad-scale environmental contexthuman digestive system
collection date2012
environmental mediumsubgingival plaque
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourceoral metagenome
project nameThe samples within this Bioproject represents the oral metagenome (whole genome shotgun (WGS) sequencing) collected from the Native American Indian tribes of South Dakota. The samples were collected from the dental plaque of children aged 5-18 years old. The samples are collected from 5 different conditions: healthy, light caries, moderate caries, severe caries, and periodontal caries. The project goal is to identify the species level characterization of the bacterial community present in the oral metagenome.
sample nameSRR11085311_bin.13_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
INSDC center nameEMG
Submitter IdSRR11085311_bin.13_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEBI-EMG
completeness score55.88
completeness softwareCheckM
contamination score0.43
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextoral cavity
metagenomic sourceoral metagenome
sample derived fromSAMN13714809
scientific_nameSelenomonas noxia
sequencing methodIllumina MiSeq
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas;s__Selenomonas noxia
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR11085311 of study SRP249393.

BioProject
PRJEB56428
Retrieve all samples from this project

Submission
EBI; 2023-09-14
Accession:
SAMEA114382559
ID:
37394438

BioProject Nucleotide

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