Metagenome-Assembled Genome: SRR13740644_bin.11_Me... - BioSample

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Result Filters

Organism: [Eubacterium] brachy
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriales incertae sedis; Eubacteriales Family XIII. Incertae Sedis

Attributes

broad-scale environmental context	human excretory system
collection date	not provided
environmental medium	urine
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	urine metagenome
project name	Metagenomic sequencing of 122 symptomatic and 30 asymptomatic genitourinary microbiomes
sample name	SRR13740644_bin.11_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
Submitter Id	SRR13740644_bin.11_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EBI-EMG
completeness score	69.48
completeness software	CheckM
contamination score	4.96
geographic location (latitude)	38.63
geographic location (longitude)	-90.19
local environmental context	urethra
metagenomic source	urine metagenome
sample derived from	SAMN17964570
scientific_name	[Eubacterium] brachy
sequencing method	NextSeq 500
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__;g__;s__[Eubacterium] brachy
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR13740644 of study SRP307023.

Metagenome-Assembled Genome: SRR13740644_bin.11_MetaWRAP_v1.3_MAG
Metagenome-Assembled Genome: SRR13740644_bin.11_MetaWRAP_v1.3_MAG

biosample
Norum disease
Norum disease

MedGen
C0023195[conceptid] (1)
MedGen
MAG TPA_asm: Proteus mirabilis isolate SRR13740716_bin.1_MetaWRAP_v1.3_MAG, whol...
MAG TPA_asm: Proteus mirabilis isolate SRR13740716_bin.1_MetaWRAP_v1.3_MAG, whole genome shotgun sequencing project
gi|2581011501|tpe|CAUPPI000000000.1 PI010000000

Nucleotide
L-threonine 3-dehydrogenase, mitochondrial [Rattus norvegicus]
L-threonine 3-dehydrogenase, mitochondrial [Rattus norvegicus]
gi|157822813|ref|NP_001099514.1|

Protein

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