broad-scale environmental context | aquatic biome |
---|
collected by | JOHANA ROTTEROVA |
---|
collection date | 2021-10-07 |
---|
depth | 1899-12-30 |
---|
environmental medium | ciliate culture |
---|
geographic location | USA |
---|
host life stage | vegetative cell |
---|
host | Metopus sp. strain F25B |
---|
host taxonomy ID | 2980492 (2980492) |
---|
identified by | JOHANA ROTTEROVA |
---|
investigation type | metagenome-assembled genome |
---|
isolation source | Ciliate: Metopus sp. strain F25B |
---|
tissue | UNICELLULAR ORGANISMS IN CULTURE |
---|
project name | ASG |
---|
sample collection device or method | hand collected into a 50 ml tube |
---|
sample name | 55aab3a5-de4e-4c55-acd5-ede7382e386b |
---|
specimen voucher | NOT PROVIDED |
---|
16S recovered | Yes |
---|
16S recovery software | PROKKA (version 1.14.5) |
---|
ENA-CHECKLIST | ERC000047 |
---|
GAL | University of British Columbia |
---|
GAL_sample_id | F25B3 |
---|
INSDC center name | Tree of Life Programme |
---|
MAG coverage software | Minimap2 (version 2.24-r1122) |
---|
Submitter Id | 55aab3a5-de4e-4c55-acd5-ede7382e386b |
---|
assembly quality | Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better |
---|
assembly software | metaMDBG |
---|
barcoding center | UNIVERSITY OF RHODE ISLAND |
---|
binning parameters | coverage; graph; hic-mapping |
---|
binning software | MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR |
---|
collecting institution | UNIVERSITY OF RHODE ISLAND |
---|
completeness score | 96.02 |
---|
completeness software | checkM (version 1.2.1); checkM_DB (release 2015-01-16) |
---|
contamination score | 0.0 |
---|
culture_or_strain_id | F25B strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA |
---|
geographic location (latitude) | 41.49 |
---|
geographic location (longitude) | -71.42 |
---|
geographic location (region and locality) | RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND |
---|
habitat | salt marsh sediment |
---|
identifier_affiliation | UNIVERSITY OF RHODE ISLAND |
---|
local environmental context | marine salt marshe biome |
---|
metagenomic source | ciliate metagenome |
---|
number of standard tRNAs extracted | 80 |
---|
original collection date | 2019-08-22 |
---|
original collection location | USA | MASSACHUSETTS | FALMOUTH | FRESH RIVER |
---|
original geographic location (latitude) | 41.541889 |
---|
original geographic location (longitude) | -70.622194 |
---|
sample derived from | SAMEA114406888 |
---|
scientific_name | Phycisphaeraceae bacterium |
---|
sequencing method | Pacbio Sequel II |
---|
specimen_id | UOBC0000023 |
---|
symbiont | N |
---|
tRNA extraction software | PROKKA (version 1.14.5) |
---|
taxonomic classification | GTDB-TK (version 2.1.1); GTDB (release 207_v2) |
---|
taxonomic identity marker | taxonomic novelty determined using RED |
---|
tolid | piMetSpee1.Phycisphaeraceae_1 |
---|