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4b48c405-a8b0-44ce-a896-9916d3c4254b-asg-MAGScoT_cleanbin_000060

Identifiers
BioSample: SAMEA114407044; SRA: ERS16395718
Organism
Desulfobacterales bacterium
cellular organisms; Bacteria; Thermodesulfobacteriota; Desulfobacteria; Desulfobacterales; unclassified Desulfobacterales
Attributes
broad-scale environmental contextaquatic biome
collected byJOHANA ROTTEROVA
collection date2021-10-07
depth1899-12-30
environmental mediumciliate culture
geographic locationUSA
host life stagevegetative cell
hostMetopus sp. strain F25B
host taxonomy ID2980492 (2980492)
identified byJOHANA ROTTEROVA
investigation typemetagenome-assembled genome
isolation sourceCiliate: Metopus sp. strain F25B
tissueUNICELLULAR ORGANISMS IN CULTURE
project nameASG
sample collection device or methodhand collected into a 50 ml tube
sample name4b48c405-a8b0-44ce-a896-9916d3c4254b
specimen voucherNOT PROVIDED
16S recoveredYes
16S recovery softwarePROKKA (version 1.14.5)
ENA-CHECKLISTERC000047
GALUniversity of British Columbia
GAL_sample_idF25B3
INSDC center nameTree of Life Programme
MAG coverage softwareMinimap2 (version 2.24-r1122)
Submitter Id4b48c405-a8b0-44ce-a896-9916d3c4254b
assembly qualitySingle contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly softwaremetaMDBG
barcoding centerUNIVERSITY OF RHODE ISLAND
binning parameterscoverage; graph; hic-mapping
binning softwareMAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
collecting institutionUNIVERSITY OF RHODE ISLAND
completeness score94.03
completeness softwarecheckM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score0.0
culture_or_strain_idF25B strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA
geographic location (latitude)41.49
geographic location (longitude)-71.42
geographic location (region and locality)RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND
habitatsalt marsh sediment
identifier_affiliationUNIVERSITY OF RHODE ISLAND
local environmental contextmarine salt marshe biome
metagenomic sourceciliate metagenome
number of standard tRNAs extracted38
original collection date2019-08-22
original collection locationUSA | MASSACHUSETTS | FALMOUTH | FRESH RIVER
original geographic location (latitude)41.541889
original geographic location (longitude)-70.622194
sample derived fromSAMEA114406888
scientific_nameDesulfobacterales bacterium
sequencing methodPacbio Sequel II
specimen_idUOBC0000023
symbiontN
tRNA extraction softwarePROKKA (version 1.14.5)
taxonomic classificationGTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity markertaxonomic classification defined by topology and ANI
tolidpiMetSpee1.Desulfobacterales_5
BioProject
PRJEB69036 piMetSpee1.metagenome
Retrieve all samples from this project

Submission
EBI; 2023-09-22
Accession:
SAMEA114407044
ID:
37510588

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