Metagenome-Assembled Genome: SRR5395413_bin.7_Meta... - BioSample

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Result Filters

Organism: Capnocytophaga sputigena
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga

Attributes

broad-scale environmental context	human digestive system
collection date	not provided
environmental medium	saliva
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	oral metagenome
project name	salivary metagenomic in Chinese Children
sample name	SRR5395413_bin.7_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
Submitter Id	SRR5395413_bin.7_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EBI-EMG
completeness score	96.06
completeness software	CheckM
contamination score	0.63
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	oral cavity
metagenomic source	oral metagenome
sample derived from	SAMN06646483
scientific_name	Capnocytophaga sputigena
sequencing method	Illumina HiSeq 2500
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga sputigena
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR5395413 of study SRP102724.

Metagenome-Assembled Genome: SRR5395413_bin.7_MetaWRAP_v1.3_MAG
Metagenome-Assembled Genome: SRR5395413_bin.7_MetaWRAP_v1.3_MAG

biosample
MAG TPA_asm: uncultured Candidatus Saccharibacteria bacterium isolate SRR1108530...
MAG TPA_asm: uncultured Candidatus Saccharibacteria bacterium isolate SRR11085304_bin.4_MetaWRAP_v1.3_MAG, whole genome shotgun sequencing project
gi|2580143825|tpe|CAUOPH000000000.1 PH010000000

Nucleotide
MAG TPA_asm: uncultured Candidatus Saccharibacteria bacterium isolate SRR5395422...
MAG TPA_asm: uncultured Candidatus Saccharibacteria bacterium isolate SRR5395422_bin.14_MetaWRAP_v1.3_MAG, whole genome shotgun sequencing project
gi|2585994864|tpe|CAUSLJ000000000.1 LJ010000000

Nucleotide
MAG TPA_asm: [Eubacterium] brachy isolate SRR11085312_bin.3_MetaWRAP_v1.3_MAG, w...
MAG TPA_asm: [Eubacterium] brachy isolate SRR11085312_bin.3_MetaWRAP_v1.3_MAG, whole genome shotgun sequencing project
gi|2580152953|tpe|CAUOMA000000000.1 MA010000000

Nucleotide
MAG TPA_asm: Porphyromonas endodontalis isolate SRR5395403_bin.7_MetaWRAP_v1.3_M...
MAG TPA_asm: Porphyromonas endodontalis isolate SRR5395403_bin.7_MetaWRAP_v1.3_MAG, whole genome shotgun sequencing project
gi|2586391285|tpe|CAUSLK000000000.1 LK010000000

Nucleotide

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