Metagenome-Assembled Genome: SRR15839773_bin.2_Met... - BioSample

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Result Filters

Organism: uncultured bacterium
cellular organisms; Bacteria; environmental samples

Attributes

broad-scale environmental context	human digestive system
collection date	2018-08-30
environmental medium	saliva
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	oral metagenome
project name	The salivary microbiome of SACC patients and healthy controls was profiled to investigate the microbial diversity, composition and function
sample name	SRR15839773_bin.2_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
Submitter Id	SRR15839773_bin.2_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EBI-EMG
completeness score	71.91
completeness software	CheckM
contamination score	2.25
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	oral cavity
metagenomic source	oral metagenome
sample derived from	SAMN21380438
scientific_name	uncultured bacterium
sequencing method	Illumina MiSeq
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Candidatus Absconditabacteria;c__;o__;f__;g__;s__
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR15839773 of study SRP336507.