Metagenome-Assembled Genome: ERR10083901_bin.1_Met... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Metagenome-Assembled Genome: ERR10083901_bin.1_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA114449369; SRA: ERS16436013

Organism: Neisseria elongata
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria

Attributes

broad-scale environmental context	human digestive system
collection date	not provided
environmental medium	dental plaque
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	oral metagenome
project name	This study collected dental plaque samples from two non-industrial populations in Cameroon, the Baka and the Nzime. Two plaque samples were collected per individual, one from anterior teeth and one from posterior teeth.
sample name	ERR10083901_bin.1_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
Submitter Id	ERR10083901_bin.1_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EBI-EMG
completeness score	82.73
completeness software	CheckM
contamination score	0.83
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	oral cavity
metagenomic source	oral metagenome
sample derived from	SAMEA8023424
scientific_name	Neisseria elongata
sequencing method	NextSeq 500
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Neisseriales;f__Neisseriaceae;g__Neisseria;s__Neisseria elongata
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR10083901 of study ERP126455.