Metagenome-assembled genome: ERS329798__bin1

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Result Filters

Organism: Lactobacillus johnsonii
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

Attributes

broad-scale environmental context	host-associated habitat
collection date	2006
environmental medium	feces
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	cat gut
project name	cat_mags
sample name	ERS329798__bin1
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2023-10-21T00:32:42Z
ENA-LAST-UPDATE	2023-10-21T00:32:42Z
External Id	SAMEA114501407
INSDC center alias	INRA-META
INSDC center name	Institut National pour la Recherche Agronomique (FRANCE)
INSDC first public	2023-10-21T00:32:42Z
INSDC last update	2023-10-21T00:32:42Z
INSDC status	public
Submitter Id	ERS329798__bin1
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes 3.15.5
binning parameters	COMEBin defaults.
binning software	COMEBin v1.0.0
completeness score	99.99
completeness software	CheckM2
contamination score	0.03
geographic location (latitude)	0.0
geographic location (longitude)	0.0
local environmental context	host-associated habitat
metagenomic source	gut metagenome
sample derived from	ERS329798
scientific_name	Lactobacillus johnsonii
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach