Metagenome-assembled genome: ERS723600__bin3

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Result Filters

Organism: Lactobacillus acidophilus
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

Attributes

broad-scale environmental context	host-associated habitat
collection date	2012
environmental medium	feces
geographic location	United Kingdom
investigation type	metagenome-assembled genome
isolation source	cat gut
project name	cat_mags
sample name	ERS723600__bin3
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2023-10-21T00:32:40Z
ENA-LAST-UPDATE	2023-10-21T00:32:40Z
External Id	SAMEA114501574
INSDC center alias	INRA-META
INSDC center name	Institut National pour la Recherche Agronomique (FRANCE)
INSDC first public	2023-10-21T00:32:40Z
INSDC last update	2023-10-21T00:32:40Z
INSDC status	public
Submitter Id	ERS723600__bin3
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes 3.15.5
binning parameters	COMEBin defaults.
binning software	COMEBin v1.0.0
completeness score	99.96
completeness software	CheckM2
contamination score	0.11
geographic location (latitude)	0.0
geographic location (longitude)	0.0
local environmental context	host-associated habitat
metagenomic source	gut metagenome
sample derived from	ERS723600
scientific_name	Lactobacillus acidophilus
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin from the metagenomic sample ERS723600

Metagenome-assembled genome: ERS723600__bin3
Metagenome-assembled genome: ERS723600__bin3

biosample
MAG: Plesiomonas shigelloides isolate ERS723676__bin11, whole genome shotgun seq...
MAG: Plesiomonas shigelloides isolate ERS723676__bin11, whole genome shotgun sequencing project
gi|2595152470|emb|CAUWKT000000000.1 KT010000000

Nucleotide
MAG: uncultured Collinsella sp. isolate SRS17165149__bin33, whole genome shotgun...
MAG: uncultured Collinsella sp. isolate SRS17165149__bin33, whole genome shotgun sequencing project
gi|2595115068|emb|CAUWIL000000000.1 IL010000000

Nucleotide
MAG: Alistipes ihumii isolate ERS723642__bin56, whole genome shotgun sequencing ...
MAG: Alistipes ihumii isolate ERS723642__bin56, whole genome shotgun sequencing project
gi|2595135212|emb|CAUWLQ000000000.1 LQ010000000

Nucleotide

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