Metagenome-assembled genome: ERS329825__bin55

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Mediterraneibacter gnavus
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter

Attributes

broad-scale environmental context	host-associated habitat
collection date	2006
environmental medium	feces
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	cat gut
project name	cat_mags
sample name	ERS329825__bin55
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2023-10-21T00:32:41Z
ENA-LAST-UPDATE	2023-10-21T00:32:41Z
External Id	SAMEA114501595
INSDC center name	INRA-META
INSDC first public	2023-10-21T00:32:41Z
INSDC last update	2023-10-21T00:32:41Z
INSDC status	public
Submitter Id	ERS329825__bin55
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes 3.15.5
binning parameters	COMEBin defaults.
binning software	COMEBin v1.0.0
completeness score	99.96
completeness software	CheckM2
contamination score	0.07
geographic location (latitude)	0.0
geographic location (longitude)	0.0
local environmental context	host-associated habitat
metagenomic source	gut metagenome
sample derived from	ERS329825
scientific_name	[Ruminococcus] gnavus
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin from the metagenomic sample ERS329825

Metagenome-assembled genome: ERS329825__bin55
Metagenome-assembled genome: ERS329825__bin55

biosample
MAG: uncultured Faecalibacterium sp. isolate SRS15956992__bin1, whole genome sho...
MAG: uncultured Faecalibacterium sp. isolate SRS15956992__bin1, whole genome shotgun sequencing project
gi|2595135695|emb|CAUWCE000000000.1 CE010000000

Nucleotide
MAG: Candidatus Choladousia sp. isolate ERS329816__bin8, whole genome shotgun se...
MAG: Candidatus Choladousia sp. isolate ERS329816__bin8, whole genome shotgun sequencing project
gi|2595148466|emb|CAUWNK000000000.1 NK010000000

Nucleotide
MAG: uncultured Alloprevotella sp. isolate ERS329807__bin96, whole genome shotgu...
MAG: uncultured Alloprevotella sp. isolate ERS329807__bin96, whole genome shotgun sequencing project
gi|2595139884|emb|CAUWHG000000000.1 HG010000000

Nucleotide
MAG: Acidaminococcus intestini isolate ERS329810__bin66, whole genome shotgun se...
MAG: Acidaminococcus intestini isolate ERS329810__bin66, whole genome shotgun sequencing project
gi|2595124030|emb|CAUWBS000000000.1 BS010000000

Nucleotide

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample