Metagenome-assembled genome: SRS17165149__bin33

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Result Filters

Organism: uncultured Collinsella sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples

Attributes

broad-scale environmental context	host-associated habitat
collection date	2021
environmental medium	feces
geographic location	China
investigation type	metagenome-assembled genome
isolation source	cat gut
project name	cat_mags
sample name	SRS17165149__bin33
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2023-10-21T00:32:41Z
ENA-LAST-UPDATE	2023-10-21T00:32:41Z
External Id	SAMEA114501603
INSDC center alias	INRA-META
INSDC center name	Institut National pour la Recherche Agronomique (FRANCE)
INSDC first public	2023-10-21T00:32:41Z
INSDC last update	2023-10-21T00:32:41Z
INSDC status	public
Submitter Id	SRS17165149__bin33
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes 3.15.5
binning parameters	COMEBin defaults.
binning software	COMEBin v1.0.0
completeness score	99.93
completeness software	CheckM2
contamination score	0.15
geographic location (latitude)	0.0
geographic location (longitude)	0.0
local environmental context	host-associated habitat
metagenomic source	gut metagenome
sample derived from	SRS17165149
scientific_name	uncultured Collinsella sp.
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin from the metagenomic sample SRS17165149

Metagenome-assembled genome: SRS17165149__bin33
Metagenome-assembled genome: SRS17165149__bin33

biosample
Metagenome-assembled genome: SRS15957007__bin125
Metagenome-assembled genome: SRS15957007__bin125

biosample
Metagenome-assembled genome: ERS329820__bin38
Metagenome-assembled genome: ERS329820__bin38

biosample
Metagenome-assembled genome: ERS329825__bin55
Metagenome-assembled genome: ERS329825__bin55

biosample
MAG: uncultured Faecalibacterium sp. isolate SRS15956992__bin1, whole genome sho...
MAG: uncultured Faecalibacterium sp. isolate SRS15956992__bin1, whole genome shotgun sequencing project
gi|2595135695|emb|CAUWCE000000000.1 CE010000000

Nucleotide

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