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be0d9eb2-b52a-4bc9-8e92-bcc4cc03a159-asg-MAGScoT_cleanbin_000003

Identifiers
BioSample: SAMEA114511327; SRA: ERS16492673
Organism
Halieaceae bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Cellvibrionales; Halieaceae; unclassified Halieaceae
Attributes
broad-scale environmental contextaquatic biome
collected byGUSTAVO SANCHEZ
collection date2021-04-26
environmental mediumadult cephalopod tissue
geographic locationJapan
host life stageadult
hostSepioteuthis lessoniana
host sexfemale
host taxonomy ID34570 (34570)
identified byGUSTAVO SANCHEZ
investigation typemetagenome-assembled genome
isolation sourceCephalopod: Sepioteuthis lessoniana
tissueWHOLE ORGANISM
project nameASG
sample namebe0d9eb2-b52a-4bc9-8e92-bcc4cc03a159
specimen voucherNOT COLLECTED
16S recoveredYes
16S recovery softwarePROKKA (version 1.14.5)
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-10-18T17:23:25Z
ENA-LAST-UPDATE2023-10-18T17:23:25Z
External IdSAMEA114511327
GALUniversity of Vienna (Cephalopod)
GAL_sample_idNOT PROVIDED
INSDC center aliasTree of Life Programme
INSDC center nametree of life programme
INSDC first public2023-10-18T17:23:25Z
INSDC last update2023-10-18T17:23:25Z
INSDC statuspublic
MAG coverage softwareMinimap2 (version 2.24-r1122)
Submitter Idbe0d9eb2-b52a-4bc9-8e92-bcc4cc03a159
assembly qualitySingle contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly softwaremetaMDBG
binning parameterscoverage; graph; hic-mapping
binning softwareMAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
collecting institutionHiroshima University
completeness score98.7
completeness softwarecheckM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score1.99
geographic location (latitude)not collected
geographic location (longitude)not collected
geographic location (region and locality)Kaminokai | Tosa Bay | Kochi Prefecture
habitatNeritic, near shore
identifier_affiliationHiroshima University
local environmental contextmarine biome
metagenomic sourcemollusc metagenome
number of standard tRNAs extracted44
sample derived fromSAMEA114511313
scientific_nameHalieaceae bacterium
sequencing methodPacbio Sequel II
specimen_idVIEC0000008
tRNA extraction softwarePROKKA (version 1.14.5)
taxonomic classificationGTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity markertaxonomic novelty determined using RED
tolidxcSepLess1.Halieaceae_1
BioProject
PRJEB69241 xcSepLess1.metagenome
Retrieve all samples from this project

Submission
EBI; 2023-10-19
Accession:
SAMEA114511327
ID:
37880735

BioProject Nucleotide

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